Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08254.7209125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08265.4655875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08274.9933625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08285.3585875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08314.4532United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08324.5338625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08334.6213125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08344.341075United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08355.124425United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08365.0915875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08374.4562United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08394.8208875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08404.7856875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08415.46675United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08424.7255125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08434.687125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08444.97475United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08455.3111875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08464.8091625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08474.874375United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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