Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09865.9108United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09875.1051375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09884.864375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09914.787183333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09924.730725United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09964.676525United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09974.804825United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09985.2903375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09994.9212375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10004.815425United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10015.1368875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10025.7838United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10035.144825United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10074.6500625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10085.1038125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10095.4927625United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10115.58405United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10125.55625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10135.7454375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10145.5443375United StatesColorado39.00672-108.46384
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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