Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09585.5337625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09595.22685United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09605.474225United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09615.12895United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09625.1594United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09675.54565United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09684.98475United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09695.1289625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09704.790275United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09725.5112625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09754.729425United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09764.9384625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09775.1646875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09784.8180625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09805.644875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09814.8656875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09824.819375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09834.7677875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09844.49925United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09855.19775United StatesNew Mexico36.7268-104.01913
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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