Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08934.3603125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08944.0018375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08974.3351875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08984.914625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09015.4438United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09026.2137375United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09034.914183333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09075.746733333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09086.01346United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09116.055United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09125.015175United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09134.851125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09145.4716United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09195.8235United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09205.2189125United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09214.663275United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09224.5772875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09235.0813375United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09244.90432United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09274.867025United StatesArizona34.75056-112.01697
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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