Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08484.2386125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08514.7162United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08524.87625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08535.48745United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08545.4583625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08555.3855875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08564.749275United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08574.7135375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08584.7598625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08594.93845United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08604.8471625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08615.82875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08625.457985714United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08635.990175United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08645.8446625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08655.3551875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08665.378083333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08675.47685United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08685.1236625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08695.3088625United StatesCalifornia38.7892-119.9363
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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