Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08254.581275United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08265.378975United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08274.8484875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08285.25595United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08314.316675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08324.4013625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08334.4714625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08344.1870375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08355.00725United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08364.938475United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08374.2822875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08394.673875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08404.66725United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08415.349875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08424.5654United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08434.5455625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08444.8617125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08455.2189125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08464.6275625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08474.7651625United StatesCalifornia33.69278-116.18411
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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