Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13414.7797United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13423.999175United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13433.9105375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13443.857625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13454.5667United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13464.17115United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13474.3828375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13484.21215United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13504.087825United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13514.537625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13524.0812United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13534.7545625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13545.4768875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13555.0297375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13564.2717United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13594.919925United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13604.4648375United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13613.8153United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13635.7083625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13645.597275United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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