Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08934.3166875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08943.9753625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08974.2849375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08984.8498125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09015.3366375United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09026.1608125United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09034.864816667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09075.713216667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09085.87162United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09115.9624United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09124.863075United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09134.774425United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09145.408075United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09195.76925United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09205.087925United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09214.6289United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09224.51115United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09235.0429625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09244.85352United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09274.7942375United StatesArizona34.75056-112.01697
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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