Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09295.073375United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09314.2743125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09324.2201United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09334.778375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09344.820725United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09394.067975United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09404.6698875United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09436.0126625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09445.377675United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09475.3975United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09485.6382625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09495.496725United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09505.263875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09514.7797125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09525.225525United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09534.9715375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09544.7691375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09555.5840375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09565.2810875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09574.86835United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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