Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08705.713675United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08715.4874625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08735.0151875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08744.9715375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08766.033825United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08775.3446United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08785.5575625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08796.031175United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08805.233475United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08814.2439375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08824.236United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08834.5164375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08843.7359375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08854.63155United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08863.6830125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08874.45295United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08884.5945United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08894.4000375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08913.978025United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08924.4873375United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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