Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08484.1936375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08514.677825United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08524.8114375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08535.42925United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08545.3988375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08555.3313625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08564.7228125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08574.639475United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08584.7135625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08594.89085United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08604.8194United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08615.7547United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08625.385428571United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08635.926675United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08645.797025United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08655.323425United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08665.332233333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08675.42925United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08685.06545United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08695.2758125United StatesCalifornia38.7892-119.9363
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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