Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08254.5482United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08265.2916375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08274.812775United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08285.20835United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08314.2518625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08324.34975United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08334.4344375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08344.1592375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08354.9596United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08364.9027375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08374.2479United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08394.5918625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08404.6235875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08415.303575United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08424.51115United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08434.529675United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08444.81675United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08455.1620125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08464.5786125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08474.6884125United StatesCalifornia33.69278-116.18411
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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