Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13854.1235375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13864.122225United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13873.832475United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13883.8946625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13894.0917875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13904.1553United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13914.5958375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13923.909225United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13934.627575United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13944.1023625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13954.1288375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13964.6090375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13974.0812United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13984.1354375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13994.6249125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14004.4741125United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14013.7266625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14024.2836United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14034.9185875United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14044.3510875United StatesTexas27.77652-97.66801
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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