Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13655.1461375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13665.00195United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13674.41855United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13684.9715125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13694.627575United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13704.5309875United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13713.7809United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13724.0626875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13734.451625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13744.9662375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13755.2863875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13764.224075United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13775.2242United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13784.2082United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13794.1777625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13804.6103625United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13813.917175United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13823.82325United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13834.9847625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13843.975375United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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