Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13414.76515United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13423.984625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13433.892025United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13443.8258875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13454.5429United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13464.1169375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13474.3524United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13484.1672United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13504.0044625United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13514.4675United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13524.0375625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13534.7268United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13545.438525United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13555.0019375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13564.2386375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13594.8749375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13604.4423625United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13613.767675United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13635.6620875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13645.5522875United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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