Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13205.1329United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13214.7371United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13225.3922125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13234.302125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13245.3974875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13255.035United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13264.9477125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13275.1646625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13284.561425United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13294.9701875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13304.5045125United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13313.8695375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13324.3868United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13334.163225United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13344.247875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13354.56275United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13364.919925United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13384.0256375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13394.52305United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13404.0864875United StatesTexas29.11355-97.39837
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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