Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12635.04695United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12644.5468875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12654.4569United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12665.5350875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12674.19365United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12684.216125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12695.19245United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12704.5032125United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12915.644875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12924.8022United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12945.0615United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13004.8432125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13025.089275United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13115.1541United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13144.740025United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13155.5364125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13164.7095875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13174.6831375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13185.24405United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13194.4476625United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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