Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12394.575028571United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12404.2359625United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12414.0878125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12424.8551United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12435.0244125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12444.9702United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12474.783675United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12484.253175United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12494.6183United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12504.5058625United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12515.184066667United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12525.1435United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12535.8009875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12545.5350625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12555.2996125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12565.4160375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12574.953United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12584.9080125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12594.971525United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12604.8194United StatesCalifornia33.92321-116.86432
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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