Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12155.2797625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12174.3696125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12184.345775United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12194.4039875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12205.027071429United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12215.1554United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12225.1381875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12234.658United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12244.587875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12265.462325United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12274.9133United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12285.185825United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12294.253175United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12304.7916125United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12325.2996125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12334.927875United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12354.6910625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12364.6354875United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12374.4423625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12385.05485United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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