Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11684.770425United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11695.204375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11705.269175United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11715.2427125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11725.2189United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11754.9437375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11764.9185875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11785.63695United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11794.4304375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11804.945075United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11915.667375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11925.35385United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11945.9200375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11965.9028625United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11975.6051875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11985.943875United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12115.5086375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12125.42925United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12134.6447875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12144.6672625United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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