Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11465.4041125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11474.7347125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11485.7560125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11495.7811375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11505.4504125United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11515.2665375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11525.566825United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11534.994United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11545.101175United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11555.6673875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11564.729425United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11575.378975United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11584.3510625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11594.6011United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11604.9014United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11634.8498125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11645.1527625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11655.3856United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11665.1223375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11674.732075United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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