Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11095.711025United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11105.3287United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11154.7783875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11165.222875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11174.5600875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11185.0217875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11194.8114375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11204.6818United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11235.2069875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11244.6421United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11294.9543125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11305.2506625United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11335.4888United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11354.93845United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11364.7254625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11375.196425United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11384.6394625United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11435.4345375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11445.3181375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11455.2466875United StatesUtah40.51274-109.51947
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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