Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10804.90935United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10845.203025United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10855.09855United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10864.9582875United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10894.572United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10905.4120625United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10915.156725United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10924.3696United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10934.6910875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10944.9926875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10955.1673125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10964.852475United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10975.232125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10984.5468625United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11015.4623375United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11034.9437375United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11044.3894375United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11055.015175United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11065.6647375United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11074.974175United StatesUtah40.1781-111.65071
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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