Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10374.8498125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10385.299625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10395.916075United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10405.4186625United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10454.1618875United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10464.9927United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10513.74255United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10614.4449875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10624.8471875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10684.319325United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10694.9715125United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10705.1077875United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10714.7122375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10724.9199375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10735.2546125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10754.6275625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10765.2268625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10775.401475United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10785.2096625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10795.121United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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