Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10155.8592United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10165.520525United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10174.97416United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10184.68445United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10194.7479625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10205.572125United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10215.05355United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10224.6553375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10235.40985United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10245.1197United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10255.5615625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10265.418675United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10295.14615United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10305.860525United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10316.0325125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10326.3870375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10334.9834375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10345.748075United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10354.7439875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10366.5087625United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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