Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08932.2754375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08942.68815United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08972.3746375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08982.50825United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09013.569225United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09022.656425United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09032.6423United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09073.34435United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09083.03954United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09113.201475United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09122.7675375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09132.538675United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09143.0546United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09193.193525United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09202.48045United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09212.6312875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09222.714625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09232.90645United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09242.77708United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09272.581United StatesArizona34.75056-112.01697
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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