Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08702.98185United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08713.1022375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08733.0281375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08742.8376625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08762.975275United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08772.9951United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08782.6894875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.741075United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08803.1221United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08812.48575United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08822.0452375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08832.36405United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08842.07435United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08852.4474125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08862.143125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08872.5506United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08882.5571875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.2132375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08912.2806875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.14445United StatesCalifornia37.17346-118.27904
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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