Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08482.377275United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08512.5744United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08522.6961United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08532.6048125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08542.7702125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08552.7662125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08562.6154United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08572.709325United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08582.7463875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08592.9818375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08602.57045United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08613.172375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08622.860528571United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08633.081075United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08642.790025United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08652.75695United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08662.547066667United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08672.7305United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08682.9673125United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08692.8919125United StatesCalifornia38.7892-119.9363
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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