Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08252.8019375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08262.913075United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08272.9434875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08283.092975United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08311.964525United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08322.382575United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08332.53205United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08342.665675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.34025United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08362.4712United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08372.4262375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08392.624675United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08402.6736125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08412.6948United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08422.9263United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08432.49105United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08442.607475United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08452.7291875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08462.9514375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08472.870725United StatesCalifornia33.69278-116.18411
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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