Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12632.864125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12642.390525United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12652.7993United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12663.104875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12672.656425United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12682.61145United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12692.8403125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12702.5638125United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12912.993775United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12922.5281United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12942.9024875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13002.708025United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13022.5373625United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13112.7834United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13142.541325United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13152.6471625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13162.936875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13172.521475United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13182.9778875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13192.719925United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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