Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12392.369157143United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12402.321725United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12412.2119125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12422.4354875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12432.512225United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12442.4354875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12472.3799375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12482.3336375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12492.3495125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12502.116675United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12512.878666667United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12523.2544United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12533.103575United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12543.1273875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12552.7291875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12562.6736125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12573.0916625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12582.96335United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12592.8747United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12603.20675United StatesCalifornia33.92321-116.86432
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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