Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09582.0095125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09592.3733125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09602.3084875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09612.837675United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09623.1802875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09672.751675United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09682.7847375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09692.7569625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09702.7331375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09722.616725United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09752.5677875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09762.6088United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09772.6789125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09782.447425United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09802.9038United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09812.721225United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09822.2780625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09832.3971375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09842.2463United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09852.4645875United StatesNew Mexico36.7268-104.01913
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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