Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.22515United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09312.275425United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09322.4791375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09332.6008625United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09342.5267875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09392.14445United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09402.407725United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.6643625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09442.9897875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09473.35095United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09482.932925United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09493.1882375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09503.38005United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09512.77415United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09522.7278375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09532.5148625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09542.2754125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.3839125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.3561125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09572.610125United StatesNew Mexico35.40041-108.23557
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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