Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.812525United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09872.6960875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09882.6842United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09912.908683333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.166925United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09962.483125United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09972.6088United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09982.5545625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09992.8310375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10002.2569United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10012.9540875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10022.9845United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10032.7648875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10072.5082375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10082.5863United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.4593United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10112.8151875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10122.6987625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10132.54795United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10142.7185875United StatesColorado39.00672-108.46384
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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