Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13852.2145625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13862.365375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13871.9050125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13882.159United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13892.172225United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13902.256875United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13912.72785United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13922.2436625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13932.54United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13942.3137875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13952.128575United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13962.463275United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13972.2291United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13982.7027125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13992.7265375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14002.3984375United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14012.3243625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14022.489725United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14032.6842United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14042.760925United StatesTexas27.77652-97.66801
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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