Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13652.4698875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13662.6881625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13672.340225United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13682.4844375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13692.0716875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13702.5241375United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13712.451375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13722.4421125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13732.2860125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13742.5334United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13752.4010875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13762.2026625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13772.6299625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13782.6789125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13792.6418875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13802.497675United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13812.084925United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13822.0796375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13832.5360375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13842.3270375United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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