Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13412.4844375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13422.4421125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13432.6881625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13442.43285United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13452.8866United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13462.2489625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13472.4989875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13482.16695United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13502.2172United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13512.6908125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13522.5797United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13532.6961United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13543.03875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13552.6088United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13562.2211875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.299225United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13602.57705United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13612.2979125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13632.7000625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13642.481775United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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