Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11682.7265375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11692.5386875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11702.751675United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11713.1247375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11722.8813United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11752.6895United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11762.561175United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11782.98185United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11792.45135United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11802.6061375United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11913.1511875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11923.0202United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11943.176325United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11962.922325United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11972.9897875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11983.0427125United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12112.947475United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12123.0678625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12132.78605United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12142.6656875United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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