Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11463.0268375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11472.668325United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11482.783425United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11492.8416375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11502.866775United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11513.227925United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11522.778125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11532.543975United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11542.49765United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11553.1181United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11562.3561125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11572.7331375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11582.2278United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11592.6802375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11602.5677875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11632.319075United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11642.755625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11653.046675United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11662.61275United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11672.28865United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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