Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11092.9143875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11102.62995United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11152.5109United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11162.6233375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11172.7953125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11182.6617125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11192.680225United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11202.6445125United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11233.08505United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11242.7067United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11292.9077875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11303.0704875United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11333.0003875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11352.8138375United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11362.759625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11373.0400625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11382.6524375United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11433.1339875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11442.8270625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11453.1935125United StatesUtah40.51274-109.51947
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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