Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN098613.2062625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098711.057925United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098810.10675United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN099110.79356667United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09928.111075United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09969.176725United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN099710.2468United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN099810.8731375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN099911.1337875United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10008.730075United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN100111.9229625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN100213.6896625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN100311.091325United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10079.10305United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN100810.4271125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN100910.49295United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN101112.392725United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101211.934375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101311.6201375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101412.019275United StatesColorado39.00672-108.46384
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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