Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09588.75505United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09599.77515United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN096010.2287125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN096111.75945United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096212.7001375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096712.0673625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096811.02805United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096911.0690875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN097010.191875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN097211.2133375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09759.6155875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097610.2865875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097710.7451United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09789.1066875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN098012.9073125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN098110.6079375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09828.9880875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09838.917325United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09848.0507125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098510.1949875United StatesNew Mexico36.7268-104.01913
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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