Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09298.8489United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09317.7209375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09328.3881875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09339.5751375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09349.6477625United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09397.0724875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09408.8135United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN094312.655475United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094412.9619375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094714.33925United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094812.85405United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094913.988575United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN095014.4979375United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN095110.5794375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095211.6892United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09539.7740625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09548.559625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095510.5727United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09569.6158875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095710.0852875United StatesNew Mexico35.40041-108.23557
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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