Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08937.7208875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08948.10205United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08978.0072125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08989.4195125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN090114.4987875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090212.6238875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09039.950833333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090714.35496667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090813.8433United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN091114.18545United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091210.3828United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09139.2354875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091412.4723625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091913.632175United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09209.4878625United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09219.2435625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09229.349725United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092311.169675United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092410.19324United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09279.1995125United StatesArizona34.75056-112.01697
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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