Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN126310.8694875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12648.037725United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12659.2878875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126612.7370875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12678.5657625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12688.38215United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126911.405225United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12708.9618625United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN129112.65185United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12929.17United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN129411.2091625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN130010.0347United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13029.8188875United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN131111.0087United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13149.1361125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131511.150575United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131610.627275United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13179.083525United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131811.4750125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13199.16175United StatesTexas31.13312-104.02012
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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