Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12398.418242857United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12407.6253875United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12417.03305United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12429.178775United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12439.956375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12449.3336875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12478.8258875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12487.772425United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12498.5797625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12507.4627United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN125111.3909United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125212.746United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125313.5457875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125412.9788125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125511.1977375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125611.3764625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125711.5785125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125810.8976375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125910.994925United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN126011.822525United StatesCalifornia33.92321-116.86432
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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