Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN121511.79665United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12178.9653875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12188.962325United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12199.8409375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN122011.68278571United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN122111.80945United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122211.838875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12239.9375125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12249.6888875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122612.6810125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12279.9541United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122810.30605United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12298.1147United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN123011.2009United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN123212.4320875United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12339.5273United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12359.2367125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12368.860625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12378.89915United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12389.511275United StatesTexas29.05186-99.01808
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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