Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN116810.520775United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116910.633775United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN117011.21925United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN117112.9236United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117211.924025United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117510.442925United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117610.1263125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117813.0337625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11798.7572125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN118010.3101625United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN119113.887United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119212.6699United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119414.6495375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119613.7326125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119713.219725United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119814.207375United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN121112.6545875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121213.4168625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121310.1116125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12149.8620625United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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