Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN114613.2437125United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114710.090375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114812.8934875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114913.2240875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN115012.3814United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN115113.4494875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115212.3302125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115310.3092625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115410.2600625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115514.4680375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11569.0324375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115712.2611United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11587.939United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11599.9125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN116010.063025United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11639.27825United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116411.4437375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116513.1476United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116610.6904125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11678.755925United StatesColorado40.48679-105.09619
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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