Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN101515.4141United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101614.6516875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101713.86704United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101813.3398375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN101912.51665United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN102015.2952125United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN102113.3989875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102212.6637125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102314.9649United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102413.6484125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102515.0603625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102614.6644125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN102914.2378375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN103015.6859United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN103115.21575United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103216.457875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103313.851975United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103415.64495United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103513.1372125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103616.8447United StatesNevada39.48892-119.99511
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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